ARTICLE IN PRESS
ARTICLE IN PRESS
https://doi.org/10.1038/s41467-026-68340-4
Received: 16 January 2025
Accepted: 30 December 2025
Cite this article as: Villela, J.M.,
Damian, J.M., Gonçalves, D.R.
et al.
Soil carbon debt from land use
change in Brazil.
Nat Commun (2026).
https://doi.org/10.1038/
s41467-026-68340-4
João M. Villela, Júnior M. Damian, Daniel R. P. Gonçalves, Luis G. Barioni, Maurício R.
Cherubin & Carlos E. P. Cerri
We are providing an unedited version of this manuscript to give early access to its
findings. Before final publication, the manuscript will undergo further editing. Please
note there may be errors present which affect the content, and all legal disclaimers
apply.
If this paper is publishing under a Transparent Peer Review model then Peer
Review reports will publish with the final article.
© The Author(s) 2026. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing,
adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source,
provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included
in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative
Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission
directly from the copyright holder. To view a copy of this licence, visit
http://creativecommons.org/licenses/by/4.0/
.
Nature Communications
Article in Press
Soil carbon debt from land use change in Brazil
ARTICLE IN PRESS
ARTICLE IN PRESS
Soil carbon debt from land use change in Brazil
João M. Villela
1
, Júnior M. Damian
2
, Daniel R. P. Gonçalves
3
, Luis G. Barioni
2
, Maurício R.
Cherubin
1,4
& Carlos E. P. Cerri
1,4
*
1
Department of Soil Science, Luiz de Queiroz College of Agriculture, University of São Paulo,
Av. Pádua Dias, 11, Piracicaba, São Paulo, 13418-260, Brazil.
2
Embrapa Digital Agriculture, Av. Dr. André Tosello, 209, Campinas, São Paulo,13083-886,
Brazil.
3
Graduate Program in Agronomy, State University of Ponta Grossa, Av. General Carlos
Cavalcanti, 4748, Ponta Grossa, Paraná, 84030-900, Brazil.
4
Center for Carbon Research in Tropical Agriculture (CCARBON), University of São Paulo,
Avenida Pádua Dias, 11, Piracicaba, São Paulo, 13418-900, Brazil.
*
Corresponding author: cepcerri@usp.br
Abstract:
Carbon farming is a fundamental strategy for mitigating climate change. Brazil, with 276 million
hectares of agricultural land, has strong potential to lead this agenda, but uncertainty about soil
carbon (C) debt hinders understanding of its true mitigation capacity. Here, we estimate the soil
carbon gap, the difference between soil organic carbon (SOC) stocks under native vegetation and
agricultural land across Brazil’s six biomes, which represents the theoretical potential for soil
recarbonization. A meta-analysis using a comprehensive national SOC database (4,290 records,
0–30 cm) is used to estimate an overall carbon debt of 1.40 ± 0.1 Pg C. The results show that
sustainable practices such as crop rotation, intercropping, no-tillage, and integrated agricultural
systems enhance SOC recovery. These findings highlight Brazil’s capacity to drive global
emissions mitigation, guide low-carbon policies, and position the country as a key actor in the
emerging global carbon market.
Introduction
Quantifying the soil carbon (C) gap resulting from land-use change is fundamental for
understanding the magnitude of human-induced depletion and the potential for soil carbon
recovery
1,2
. Beyond defining static baselines, the carbon gap framework provides a dynamic
indicator of how far land-use systems have diverged from their natural equilibrium and how much
carbon can be regained through restoration or improved management
3–6
. By integrating current
soil organic carbon (SOC) stocks and their potential under reference conditions, this approach
ARTICLE IN PRESS
ARTICLE IN PRESS
reveals spatial patterns of carbon resilience across biomes, linking soil processes to land-use
history and management intensity
7,8
.
In the context of Brazil’s Nationally Determined Contributions (NDCs, 2024) under the
Paris Agreement, which target a 59–67% reduction in greenhouse-gas emissions by 2035 and
carbon neutrality by 2050
9
, the carbon gap concept offers a practical basis for climate mitigation
and sustainable agriculture. Agriculture, responsible for about 24-35%
10,11
of national emissions,
plays a dual role as both a source and a sink of carbon. Assessing the soil carbon gap supports
national low-carbon programs such as the ABC⁺ Programme (now RenovAgro), informs the design
of credible soil-based carbon credits, and identifies priority regions for sequestration and
restoration, serving as a practical basis for evaluating and improving the Agriculture and Land Use
Change initiatives
12–14
. As such, it bridges scientific evidence, policy targets, and market
mechanisms to promote soil-centered climate action at scale.
In this study, we compiled a comprehensive database of 4,290 SOC
stocks
spanning Brazil’s
major biomes (Amazon, Caatinga, Cerrado, Atlantic Forest, Pampa, and Pantanal) to establish a
consistent baseline of SOC
stocks
in native and agricultural areas, at depths of 0–10, 0–20, 0–30, and
0–100 cm. A total of 1,247 paired observations of native vegetation (NV) and agricultural systems
(AGR) were analyzed to quantify the carbon gap and estimate the theoretical soil recarbonization
potential for the 0–30 cm layer, where most management-induced changes occur. We assessed the
variability of SOC
stocks
across biomes and the effects of land-use conversion (NV to AGR), taking
into account the main soil and climate classes, as well as the age of agricultural systems.
Furthermore, we assessed the influence of different management intensity levels by classifying
management systems into three hierarchical levels encompassing five categories: (i) single-crop
systems (annual crops, perennials, or grassland); (ii) two-crop systems (rotations or intercropping);
and (iii) multi-crop systems (integrated agricultural systems).
Results and Discussion
SOC
stocks
baseline of native vegetation and agriculture in Brazilian biomes
The Atlantic Forest (rainforest) presented the highest average values of SOC
stocks
under NV
and AGR in the four layers analyzed (0–10, 0–20, 0–30 and 0–100 cm), whereas the lowest
SOC
stocks
were found in the Pantanal (tropical wetland) and Caatinga (dryland forest) biomes (Fig.
ARTICLE IN PRESS
ARTICLE IN PRESS
1, Supplementary Tables S1-3, Data1). In the 0–10 cm layer, the Atlantic Forest's NV SOC
stocks
were higher (
p
<0.001) than those of the Caatinga (86%) and Cerrado (savannah) (36%), while its
value under AGR surpassed the Pantanal’s and Caatinga’s by 154% and 62%, respectively. In the
subsequent layer, the SOC
stocks
under NV in the Atlantic Forest were 42–107% greater (
p
<0.001)
than in the Caatinga, Pantanal, Amazon (rainforest), and Pampa (native grassland), while under
AGR, they exceeded these biomes’ stocks by 12–188%. The measures in the Atlantic Forest under
AGR were also larger (10-108%) than in the aforementioned biomes in the 0–30 cm layer, while
under NV, they were greater by 29-116%, except in the Pampa. In the 0–100 cm layer, the Atlantic
Forest presented higher SOC
stocks
than the Amazon and Caatinga, both under NV (79-88%) and
AGR (54-63%).
ARTICLE IN PRESS
ARTICLE IN PRESS
ARTICLE IN PRESS
ARTICLE IN PRESS
The SOC
stocks
in the Cerrado were also larger (
p
<0.001) than those in the Caatinga in the
first three layers under NV (34-60%) and in all layers under AGR (47-86%). The biome exhibited
greater SOC
stocks
(
p
<0.001) than the Pantanal in the first three layers under AGR, with a difference
range of 90-157%, and then the Amazon in the last three, with a range of 18-44%. The levels were
also higher (
p
<0.001) than those of the Pampa (17%) in the AGR 0–20 cm layer and of the Amazon
in the AGR 0–30 cm (18%).
The Pampa and the Amazon biomes’ SOC
stocks
also presented differences (
p
<0.001) from
values for the Caatinga under AGR's first three layers (45-68%) and from the Pampa under NV’s
0–10 cm layer (59%). The SOC
stocks
in both biomes also exceeded (
p
< 0.001) those in the Pantanal
in the 0–10 and 0–20 cm layers under AGR by 90–131%. Finally, the SOC
stocks
under AGR were
52% and 62% higher (
p
<0.001) in the 0–100 cm layer in the Pampa than those in the Amazon and
Caatinga, respectively.
The climate is an important factor controlling SOC storage at regional scales, in which
precipitation and temperature influence plant growth, the input of organic material, and its rate of
decomposition and mineralization
15,16,17
.We identified a reduction in SOC
stocks
with increasing
temperature, corroborating previous studies
18,19
. Brazil is covered by three climate zones
(Köppen’s climate classification): Tropical (A), Humid Subtropical (C), and Dry (B), distributed
across 81%, 14%, and 5% of the territory, respectively
20
. Our results confirmed higher SOC
stocks
in more humid and cold regions (i.e., Humid Subtropical>Tropical>Dry) (Supplementary Tables
S4-5; Supplementary Fig. S1). The differences (
p
<0.05) in layers 0–10, 0–20 and 0–30 cm between
SOC
stocks
of the Humid Subtropical and Dry zones were 70-91% (NV) and 58-168% (AGR), while
between Tropical and Dry, they were 31-62% (NV) and 50-131% (AGR) (Supplementary Tables
S6-9), and between Subtropical and Tropical, they were 17-40% (NV) and 12-16% (AGR). More
specifically, SOC
stocks
under NV and AGR in most soil layers of the biomes occurred in the
following climatic order: Tropical rainforest-Af, Temperate
(
no dry season/warm summer
)
-Cfb
and Temperate (dry winter/warm summer)-Cwb > Temperate (dry winter/hot summer)-Cwa,
Temperate (no dry season/hot summer)-Cfa, Tropical Monsoon-Am, Tropical Savannah (summer
rain)-Aw, Tropical Savannah (winter rain)-As > Arid (steppe/ hot)-BSh (Supplementary Tables
S10,11).
In addition to climatic effects, variations in soil bulk density (BD) further influenced SOC
distribution across biomes and land uses (Supplementary Fig. S3). Under NV, BD reflected
ARTICLE IN PRESS
ARTICLE IN PRESS
intrinsic soil-forming processes, including mineralogy, clay content, and pedogenic development.
The lowest BD values were observed in Amazon and Atlantic Forest soils (1.05–1.25 Mg m⁻³),
whereas higher values occurred in the Pampa and Caatinga (1.25–1.45 Mg m⁻³). After agricultural
conversion, BD increased across all biomes, indicating compaction and structural loss. These
changes were closely associated with the magnitude of SOC
stocks
reductions, highlighting the
interaction between physical degradation and carbon depletion.
Across all evaluated biomes, SOC
stocks
under NV and AGR in topsoil (0–10, 0–20, and 0–
30 cm layers) for the five main soil classes decrease in this order: Inceptisol > Oxisol > Ultisol >
Entisol > Alfisol (see Supplementary Tables S12 and 13, Supplementary Fig. S2). Under NV,
SOC
stocks
in the first three Inceptisol soil layers were 58–142% higher (
p
<0.05) than in Alfisol and
44-127% higher than Entisol, while under AGR, the differences were 53-94% and 100-130%,
respectively. When comparing the stocks in Inceptisol with the ones in Ultisol, there was less
variation, which averaged 47% in the first two layers under NV and 43% in the topsoil under AGR.
Finally, Inceptisol SOC
stocks
were, on average, 16% greater than Oxisol SOC
stocks
in the 0–10 and
0–30 cm layers.
The SOC
stocks
of Oxisol also exceeded those of Entisol by 23-83% in the topsoil under NV
and by 72-106% under AGR. Relative to Alfisol, Oxisol SOC
stocks
were 31-67% higher in the
topsoil under AGR and, on average, 85% in the 0–20 and 0–30 cm layers under NV. Compared to
Ultisol, Oxisol SOC
stocks
in the topsoil were, on average, 25% higher under AGR and 17-30% in
the 0–20 and 0–30 cm layers under NV. Ultisol was 40% higher than Entisol in the 0–30 cm layer
under NV and 19-55% higher in the topsoil under AGR.
The highest SOC
stocks
observed in Inceptisol are due to the formation of histic O or humic
A horizons with high accumulation of organic matter, which occur in environments with rugged
relief and low temperatures throughout the year
21,22
. The high SOC
stocks
in Oxisol can be explained
by the high stability of aggregates, influenced by the strong association of SOC with Fe and Al
sesquioxides. Organo-mineral interaction is the main driver of carbon stabilization in Brazilian
tropical soils
23
. The lower SOC
stocks
observed in Alfisol can be associated with two major drivers:
i) lower annual carbon inputs by the Caatinga forest and agriculture in Brazilian drylands, and ii)
sandy texture, which reduces carbon protection and stabilization, favoring carbon losses by
mineralization and erosion processes
24,25,26,27
.
ARTICLE IN PRESS
ARTICLE IN PRESS
Overall, the high proportion of areas with a subtropical climate, the presence of soils that
favor carbon accumulation and high altitudes, as identified in our analysis (Supplementary Fig.
S4ab, Supplementary Table S14), contributed to the higher SOC
stocks
observed under NV and
AGR areas within the Atlantic Forest biome, as was also observed in a previous study in this same
biome
28
. These characteristics reveal the large mitigation potential in the biome, already
demonstrated by adopting best management practices
29,30,31,32,33,34,35,36
. Only in this biome,
approximately 20Mha
37
of pastures are classified into medium and low vegetative vigor,
commonly termed “degraded”, available for recovery. In contrast, drier climates (semi-arid) and
soils highly susceptible to erosion, such as Alfisol and Entisol, led to lower SOC
stocks
for the
Caatinga and Pantanal.
In the Cerrado, the highland tropical climate in the Central Plateau combined with the
significant presence of Oxisol contributed to the high levels of SOC
stocks
in the biome
27
. On the
other hand, in the Amazon, despite presenting high rainfall rates, high temperatures reduce the
SOC storage potential due to the increased mineralization rate
38
. However, studies of the Amazon
have shown that adequate management of integrated agricultural systems
22,39
and improved
grassland
40,41,42,43
can generate accumulations equal to or greater than NV's.
Despite the extensive database on SOC in native and agricultural areas, substantial gaps
remain, particularly in the Pantanal, where only three studies are available and without any data
for the 0–100 cm layer. Similarly, the Caatinga, Amazon, and Pampa show limited data coverage
at deeper depths, and records of NV in the Pampa are absent. Future research should, therefore,
prioritize standardized sampling of deeper soil layers (0–100 cm) and long-term monitoring,
especially in underrepresented regions, such as the Pantanal, to enhance the spatial
representativeness of national SOC
stocks
assessments.
Soil carbon gap between native vegetation and agriculture
Considering all biomes, the gaps between SOC
stocks
under NV and AGR in the 0–10, 0–20,
and 0–30 cm layers were respectively -4.4 Mg ha
-1
, confidence interval (CI): [-5.0, -3.8], - 6.9 Mg
ha
-1
, CI [-7.7, -6.1], and -5.1 Mg ha
-1
, CI [-6.0, -4.3] (Fig. 2b; Supplementary Table S15 and
Data2). These results revealed that NV-to-AGR conversion resulted in the total loss of 1.4±0.1 Pg
C in the 0–30 cm layer (Fig. 2c; Supplementary Table S16.), which is equivalent to an emission
of 5.2 Pg CO
2
eq for the whole country’s agricultural area. Although the estimated value indicates
ARTICLE IN PRESS
ARTICLE IN PRESS
a substantial negative effect of land-use change on SOC
stocks
, it also highlights the large carbon
sink potential and presents an excellent opportunity to recarbonize agricultural soils in Brazil.
Accumulation potential across biomes varied widely, mainly due to the agricultural management
practices, but also to the size of the gap between SOC
stocks
of NV and AGR, to the amount of
agricultural land available, and to other variables, including biophysical characteristics, climate,
soil class and mineralogy. About 72% of this potential is distributed among the Cerrado (0.53 Pg
C) and Atlantic Forest (0.48 Pg C) biomes, which hold the largest agricultural areas in Brazil,
respectively 93 Mha and 72 Mha (Fig. 2c, Supplementary Table S16). Approximately 23% of the
total potential is in the Amazon (0.19 Pg C) and Caatinga (0.14 Pg C) biomes, which have the third
and fourth largest agricultural areas (67 and 33 Mha, respectively). The lowest potentials were
found in the Pampa (0.05 Pg C) and Pantanal (0.01 Pg C) biomes, which comprise only 5% of the
total agricultural area.
Gaps in SOC
stocks
in biomes varied significantly (36-64% differences between maximum
and minimum values). The Atlantic Forest presented the largest gaps in SOC
stocks
in the three layers
(0–10 cm: -6.2 Mg ha
-1
, 0–20 cm: -7.6Mg ha
-1
, and 0–30 cm: -6.7 Mg ha
-1
). In contrast, the
Amazon and Caatinga exhibited the smallest gaps in SOC
stocks
in the three layers, with the lowest
value in the 0–10 cm layer observed in the Caatinga (-2.2 Mg ha
-1
), and in the 0–10 and 0–30 cm
layers in the Amazon (-3.7 Mg ha
-1
and -2.8 Mg ha
-1
, respectively). These contrasting patterns
suggest that climatic and pedogenic factors strongly mediate the response of SOC
stocks
to land-use
conversion.
To explore the mechanisms underlying this variability, we assessed the influence of
potential moderators (i.e., mean annual temperature, accumulated precipitation, and latitude) on
the observed differences between soil layers and biomes. The explanatory power of the moderating
variables ranged widely from 1% to 35% of the total heterogeneity across studies (Supplementary
Table S17-22). Variability was investigated in more depth through subgroup analyses, considering
climate and soil classes, system conversion age, and, at a more detailed level, temperature and
precipitation classes in each biome. Based on the average values of the 0–10, 0–20, and 0–30 cm
layers, the subtropical climate class presented the greatest reductions, from –11.8% to –22.7%
(average = –17.2%), followed by the tropical climate, from –7.5% to –19.4% (average = –13%)
(Supplementary Table S23). The arid climate showed the lowest average percentage loss in
SOC
stocks
(–11.7%) and lacked evidence of a significant effect. This result suggests that NV-to-
ARTICLE IN PRESS
ARTICLE IN PRESS
AGR conversion does not substantially alter carbon dynamics, possibly due to the small initial
difference between stocks under the two land uses.
In tropical climate regions, the Atlantic Forest showed the largest losses in SOC
stocks
(–
17.4%), followed by the Caatinga and Cerrado (–12.3%), then the Amazon (–10.5%). Under
subtropical climates, similar losses were observed in the Atlantic Forest and Pampa (approximately
–17.4%), while the Cerrado showed smaller reduction (- 9.8%). In Atlantic Forest areas under the
classes Cfa, Cfb, Cwa, and Cwb, which represent approximately 66% of the biome area, losses
ranged from -4.4 to -29% and under Aw, present in about 20% of the biome, ranged from -18.1 to
-26% (Supplementary Tables S24). In the Cerrado, losses observed under the Aw class, which
covers about 75% of the biome, were smaller (-10.4% to -15.2%), while losses under the Aw
climate (about 73% of the biome) in the Pantanal exceeded those in the Atlantic Forest and
Cerrado, by an average of -22.5%. In the Amazon, losses related to the Am class, which
corresponds to about half of the biome, ranged from -7.5% to -13.6%. In the Pampa, Cfa class
losses, which encompass almost the entire biome, ranged from -11.8% to -22.3%.
The difference between carbon losses resulting from agricultural conversion under
subtropical and tropical or arid climates, ranging from 32% to 47%, is related to the greater
sensitivity of soils in cold regions to disturbances. The magnitude of carbon loss is closely linked
to initial soil carbon levels. Carbon-rich soils, though naturally stable, undergo greater absolute
losses when converted to agriculture due to enhanced organic matter decomposition from soil
disturbance and oxygen exposure
11,12
. Consequently, carbon-dense biomes such as the Atlantic
Forest and Pampa, covered by subtropical climates, tend to exhibit larger carbon gaps after land-
use conversion. In contrast, in tropical and arid climate regions, the effect of conversion is less
pronounced, since the difference in SOC
stocks
is smaller, resulting from faster decomposition and
intense carbon turnover, which may have reflected in the smaller gaps recorded in the Caatinga
and Amazon.
The analysis of the different soil classes, integrating the three evaluated layers, indicated
that average carbon losses decrease with the degree of pedogenetic development: Entisol ≈
Inceptisol (-29% and -28%) > Ultisol (-21%) > Oxisol (-11%), demonstrating the greater
susceptibility of young soils to C loss after land-use conversion (Supplementary Table S25). The
Atlantic Forest showed the greatest carbon losses in Inceptisol (-33%), followed by the Cerrado (-
28%), and the Pampa and Amazon biomes (both with -13%). The percentage loss recorded in the
ARTICLE IN PRESS
ARTICLE IN PRESS
Atlantic Forest Ultisols was almost double (-24%) that observed in the Caatinga (-11%). In Oxisol,
the Atlantic Forest showed the greatest loss (-15%), followed by the Cerrado and Amazon with -
11% and -9%, respectively. The greatest carbon loss in Entisol was observed in the Pantanal (-
25%), followed by the Caatinga (-23%) and Amazon (-20%). The losses observed in the Caatinga’s
Inceptisols, the Amazon’s and Pampa’s Ultisols, the Pampa’s and Caatinga’s Oxisols, and the
Cerrado’s Entisols did not show statistical significance, possibly due to the influence of factors
such as the management system or climatic conditions.
The analysis of the average age of conversion of agricultural systems revealed that the
Pampa and Atlantic Forest have the oldest systems (≈31 years), followed by the Cerrado (26 years),
Caatinga (19 years), Amazon (18 years), and Pantanal (16 years). When evaluating the effect of
conversion age (0–15, 16–30, and >30 years) on SOC
stocks
, it was found that carbon losses occur
across biomes, being more intense in the first 15 years after conversion (Supplementary Table
S26). The Amazon showed significant losses of approximately -11% in the first 15 years after
conversion, which were reduced to -7% between 16 and 30 years, without statistical significance.
In systems older than 30 years, losses remained around -9%, indicating low recovery of SOC
stocks
over time. In the Atlantic Forest, SOC stocks decreased by approximately -15% in systems up to
30 years old and by -19% in older systems. Although the difference is modest, this pattern suggests
that SOC losses may persist over time following conversion to AGR, highlighting the biome’s
vulnerability to land use change. The Caatinga recorded a significant reduction of -17% in the first
15 years after conversion, decreasing in subsequent periods, ranging from -15% to -6%, but
without statistical significance. In the Cerrado, carbon loss during the first 15 years was lower (-
9.4%) compared to the Caatinga (-17%), Atlantic Forest (-15%), and Amazon (-11%), increasing
to -12% in the subsequent periods.
The Pampa biome was the only one to show an increase in SOC
stocks
(2%) in systems up to
15 years old, although this increase was not statistically significant. This result may reflect
transitions in management (tillage to no-tillage or to integrated agricultural systems) or the
presence of residual C from the original vegetation. Finally, the Pantanal biome recorded the
greatest C loss, averaging 24% up to 30 years, reflecting the high sensitivity of the biome's Entisol
soils to the conversion process.
The proportion of studies in certain age groups across biomes, soil and climate classes may
be reflected in the estimated C gap. The largest gaps observed in the Atlantic Forest and Pampa
ARTICLE IN PRESS
ARTICLE IN PRESS
biomes may be related to the higher proportion of studies in systems over 30 years old (48% and
53%, respectively), age groups that showed the most pronounced losses compared to systems in
other age groups. In contrast, the smaller gaps in the Amazon and Caatinga may reflect the
predominance (~80%) of data from systems up to 30 years old, which exhibited a dual behavior:
while some results were close to zero, the 16–30 year group showed negative but non-significant
results, indicating high variability and low C losses.
The larger C gap in the 0–20 layer may be related to the disturbance caused by mechanical
tillage
44,45
, which accelerates the decomposition of soil organic matter (aggregates disruption,
increased microbial activity, and aeration) and, consequently, reduces the SOC contents in the soil
surface
46
. The high variability between SOC
stocks
gaps in the biomes, mainly in the 0–10 and 0–30
cm layers, can be explained by the different edaphoclimatic conditions, soil management, and land
use history in the ecoregions
47,18,23
.
Our estimate of SOC debt (1.40 ± 0.1 Pg C) in the 0-30 cm layer in agricultural lands
represents the aggregate total for Brazil compiled from all biomes and is consistent with a global
study which also estimated national SOC loss for Brazil (1.6 Pg C
4
), although without biome-scale
resolution. Thus, our estimate provides a more detailed understanding than large-scale studies,
allowing us to identify regional patterns, biome responses, and management factors associated
with SOC changes. It is important to emphasize that our estimate represents theoretical potential,
based on a hypothetical scenario assuming the restoration of original SOC
stocks
through soil
recarbonization, and should therefore be interpreted with caution. Another aspect that should be
considered and acknowledged as a methodological limitation is the use of SOC levels under NV
as a fixed reference in estimates. Although this approach is widely adopted, in contexts involving
degraded native ecosystems or highly improved agricultural lands, this assumption may not be
fully applicable, potentially resulting in an underestimation or overestimation of the SOC gap and
accumulation potential.
Despite these limitations, our results provide the best quantitative benchmark for the
achievable SOC
stocks
to this date. It allows us to estimate an order of magnitude of the opportunity:
by recarbonizing approximately
1/3
of the estimated potential, we could achieve the 59-67%
emissions reduction target for 2035 (1.51-1.71 Pg CO2eq, base year: 2005) in Brazil's NDC
2
. In
practice, the target would be achieved by harnessing approximately 40-45% of the recarbonization
potential accumulated in the Atlantic Forest and Cerrado (3.8 Pg CO2eq).
ARTICLE IN PRESS
ARTICLE IN PRESS
Impact of agricultural system management on SOC
stocks
In a more detailed analysis of the SOC
stocks
gap in Brazilian agricultural lands, we assessed
the impacts of converting NV to different agricultural production systems on SOC
stocks
at combined
depths of 0–10, 0–20, and 0–30 cm (Fig. 3, Supplementary Table S3 and Supplementary Data3-
11). Considering all biomes, NV-to-monocropping conversion showed the highest percentage of
change, -22.2%, CI: [-27.0, -17.0%], followed by NV-to-crop rotation/intercropping, -13.0%, [-
19.6, -16.0%] (Fig. 3). The Atlantic Forest and Pampas showed the highest relative reductions in
SOC under monoculture (–33.0% and –32.1%, respectively), while the Atlantic Forest also had
the highest loss under crop rotation/intercropping (–23.6%) (Table S27). In contrast, the Cerrado
and Amazon recorded the smallest reductions under both systems, ranging from –15.8% to –8.1%
under monoculture and from –17.4% to –9.3% under rotation/intercropping. The Caatinga
ARTICLE IN PRESS
ARTICLE IN PRESS
exhibited intermediate relative changes, with SOC
stocks
losses of -22.7% under monocropping and
-12.4% under crop rotation and intercropping.
Grasslands presented, on average, a SOC
stocks
change of -9.4%, CI [-14.3, -4.1] SOC
stocks
in comparison with NV. The greatest loss was observed in the Pantanal, with -16.3%, and the
smallest in the Cerrado (-10.0%) and Atlantic Forest (-11.4%) biomes. The Caatinga and Amazon
did not present a significant difference (
p
> 0.05).
Perennial crops showed similar mean SOC
stocks
variations (9.9%, CI [-18.1, -1.0]) to those
of grasslands (-9.4%). The Atlantic Forest had the smallest difference (-8.8%), while the Cerrado
and Caatinga recorded larger ones (-10.4% and -9.3%), without statistical significance, possibly
due to high variability between areas or partial stabilization of SOC
stocks
in systems with low soil
disturbance and continuous input of organic residues.
Integrated agricultural systems had the lowest relative change (-8.6%, IC [-10.7, -4.7]),
showing average losses lower than those observed in monoculture, crop rotation/intercropping,
and grassland, respectively 61%, 34%, and 9%. Compared to NV, integrated agricultural systems
showed the largest difference in the Amazon (-14.8%), and the smallest significant difference in
the Cerrado (-7.8%), followed by the Pampa (-10%). The differences in the Atlantic Forest (-1.2%)
and Caatinga (-8.6%) were not statistically significant (Fig. 3, Supplementary Table S27). These
results revealed the benefits of agricultural intensification, understood within the framework of
sustainable intensification, in which yields increase without adverse environmental impacts or the
conversion of additional non-agricultural land
48
, mainly by biodiversification, to preserve/restore
SOC
stocks
.
Our results also showed the positive effect of intensification through the comparison
between both crop rotation/intercropping and integrated agricultural systems with monocropping.
The crop rotation and intercropping system presented an average gain of +8.9%, IC [+13.5, +4.4],
with the Pampa increasing the most (+22%), followed by the Amazon (+14.0%), and Cerrado,
with the lowest value (+8.4%), while the Atlantic Forest’s increase (+8.6%) had no statistical
significance. Under integrated agricultural systems, the average gain related to monocropping was
+12.5%, IC [+20.5, +5.1], i.e., 40% higher than the crop rotation and intercropping value, with the
Cerrado showing a gain of 15.3%. There was no significant difference (
p
> 0.05) between the
Atlantic Forest under both systems and the Amazon under integrated agricultural systems.
ARTICLE IN PRESS
ARTICLE IN PRESS
We also compared SOC
stocks
losses from NV to no-tillage and conventional tillage systems.
Our results confirmed that losses under no-tillage (-11.4%, CI [-15.7, -6.9%]) were 47% lower
than under conventional tillage (-21.4%, CI [-25.4, -17.3). The Pampa and Atlantic Forest recorded
the most significant losses under the conventional system, respectively -32.7% and -27.2%. The
loss in the Pampa was 88–110% greater than in the Cerrado (-17.2%), Caatinga (-17.4%), and
Amazon (-15.6%) biomes, while in the Atlantic Forest it exceeded these biomes by 58–74%. Under
the no-tillage system, the Atlantic Forest recorded the greatest loss of SOC
stocks
(-21.9%), followed
by the Pampa (-10.6%), while the Cerrado and Amazon presented the smallest losses of -8.0% and
-7.4%, respectively. We also evaluated the effect of the no-tillage system on different soil depths
to identify possible variations associated with the stratification induced by this management. The
results (Supplementary Fig. S5) indicated a small variation between the original mean value (-
11.4%) and those obtained in the stratified analysis (0–10 cm = -14.0%; 0–20 cm and 0–30 cm ≈
-10.0%), with a more pronounced difference in the 0–10 cm layer and slightly smaller ones in the
subsequent layers.
Soil carbon losses induced by land-use change are well-documented in the literature. Our
results, ranging from -9.4% to -26.3%, are comparable with previous studies in the tropical
49
and
global scale
50
. However, these values can be even more variable (-11.4% to -95.6%), depending
on context, when evaluated in a global perspective
51,52,53,54
. Our study showed that the magnitude
of SOC
stocks
losses in different agricultural systems decreases with the increase in their degree of
intensification and diversification, confirming the benefits induced by crop rotation,
intercropping
55,56,57,58,59,60,61
, and integrated agricultural systems
62,63,64,65,66,67,68
, reported in
different regions around the world.
For NV-to-grassland conversion (-4.1% to -14.3%), our results corroborate studies of
tropical zones
49
and of global scope (-9.8% to -14.4%)
69
, although other studies reported a positive
effect (11.5% to 8.2%)
51,52
. Best management practices (defoliation regime, plant species
manipulation, biodiversity, fertilization, improved grazing, grass-legume intercropping, and
irrigation)
70,71,72,73
and continuous grassland maintenance
74
, in addition to the effect of local soil
and climate conditions
75,1
, may explain the positive response.
The absence of significant differences observed in the Caatinga and Amazon biomes
denotes the variation in the maintenance status of Brazilian grassland areas. The greater losses
observed in the other biomes reflect the current condition of Brazilian grasslands, with ca. 60% of
ARTICLE IN PRESS
ARTICLE IN PRESS
the area found at intermediate and severe levels of degradation
40
. In this sense, grassland recovery
is an important technology in Brazil, as it can boost SOC
stocks
by 14-23%
76
. It has been adopted by
national climate mitigation initiatives (ABC
+
Programme
77
and National Program for the
Conversion of Degraded Pastures into Sustainable Agricultural and Forestry Production
78
), which
project the recovery of 40 Mha as a target
77
.
Evidence from this study highlights the role of integrated agricultural systems as effective
strategies for maintaining and rebuilding SOC
stocks
, with the smallest differences observed in the
Pampa and Cerrado and statistically non-significant differences in the Atlantic Forest and
Caatinga. Compared with monocropping, using the technology in the Cerrado showed great
potential to increase SOC
stocks
, with values close to those reported in a global study (+17% to
+23%)
1
. The ABC+ Programme's portfolio of solutions includes plans to expand these systems by
4 Mha, with the potential to mitigate up to 34 million Mg CO2eq.
The benefits of no-tillage over conventional tillage revealed in this study were consistent
with estimates previously reported for Brazil (6-26%)
79,80
. Our analysis demonstrates the potential
of no-tillage as an alternative to replace conventional tillage based on differences from NV. The
area with no-tillage in Brazil increased significantly between 2006-2017 (17.9 to 33.0 Mha)
81
, (4–
16% in SOC
stocks
), replacing conventional tillage
82
. The ABC
+
Program set a goal to expand the
system by 12.5 Mha by 2030, expecting to mitigate 12 million Mg CO
2
eq.
Although our results reveal the positive effects of agricultural intensification, these benefits
depend on local conditions such as climate, soil type, and duration of management. When
supported by conservation-oriented practices, such as no-tillage, crop rotation diversification,
cover cropping, residue retention, and the use of organic amendments, intensification can enhance
SOC inputs, improve aggregation and biological activity, and foster long-term carbon
stabilization
2,83
, while promoting positive feedbacks to crop yield and climate resilience
84,85
.
It is important to note that the SOC
stocks
gap estimates presented here represent a technical
potential based on an idealized reference of NV. In reality, native ecosystems may be partially
degraded, and improved agricultural systems can already recover part of their SOC
stocks
. Thus, our
values should be interpreted as indicative of the upper limit of carbon restoration potential, rather
than as directly attainable field targets.
ARTICLE IN PRESS
ARTICLE IN PRESS
In conclusion, this national-scale study provided quantitative evidence of the soil carbon
debt of 1.40 ± 0.1 Pg (0–30 cm) induced by historic land-use change of NV to AGR across the
Brazilian biomes. In addition, it revealed the positive effect of sustainable management
intensification (i.e., crop rotation and intercropping, no-tillage, and integrated agricultural
systems) on increasing SOC
stocks
,
which helps close this carbon gap over time. Finally, these results
support the formulation of regionally adapted intervention strategies, which could strengthen
Brazil’s climate policies and help mitigate global climate change.
ARTICLE IN PRESS
ARTICLE IN PRESS
Methods
We performed a first-order meta-analysis to examine the impacts of land-use change from native
vegetation (NV) to agricultural (AGR) habitats on SOC
stocks
of the six Brazilian biomes. A meta-
analysis was performed using data from 372 studies (Cerrado:141, Atlantic Forest:129,
Amazon:38, Pampa:34, Caatinga:28 and Pantanal:3) from the last three decades (Supplementary
Fig. S6 and Discussion). Our analysis examined the gap between SOC
stocks
under NV and AGR,
the soil C gap, which we consider our technical potential for C accumulation. We also assessed
the magnitude of the positive and negative effects of different agricultural production and
management systems on SOC
stocks
.
Systematic literature search
The systematic review was conducted by searching the Web of Science, Scopus, and Scielo
databases (see Supplementary Fig. S6 and S7 for details) for relevant studies using data collected
in the Brazilian territory until June 2024, without language restriction. We employed the following
combinations of keywords: “soil carbon stock* OR soil carbon OR soil organic* AND CU=
(Brazil)”.
Studies were selected based on the following eligibility criteria: i) having presented SOC
stocks
data
or data that allowed the calculation of SOC
stocks
(soil organic matter and soil bulk density); ii)
studies carried out in Brazil, with data on geographic coordinates or the name of the municipality
or biome. Using these criteria, we found 4,290 data points, 776 of which pertained to primary
native vegetation and 3,514 to agriculture (Supplementary Data1).
Data collection
We collected the following data from text, tables, or figures in the selected studies (using
WebPlotDigitizer
https://automeris.io/WebPlotDigitizer):land-use classes (NV or AGR), soil
(U.S. soil taxonomy) and climate classes (in the absence of information, we used the data available
in
20
), agricultural systems (monocropping, crop-rotation and intercropping, grasslands, perennial
crops, and integrated agricultural systems), SOC
stocks
in the soil layers (0-10, 0-20, 0-30 and 0-100
cm), numbers of observations, and standard deviations. These were recorded in a data framework.
SOC
stocks
estimates for the different soil depth intervals represent independent measurements
derived from the available data and should not be interpreted as cumulative profiles. Because
complete soil profiles were not consistently reported across studies, the values for each depth layer
reflect discrete sampling intervals rather than integrated depth totals. SOC
stocks
data were
standardized by converting the values from “kg m
-2
,” “g m
-2
,” “t ha
−1
,” “kg ha
−1
,” or “percentage”
to “Mg ha
−1
”. The SOC concentration data (g kg
−1
) were converted to SOC
stock
(Mg C ha
−1
) from
the soil bulk density (BD) and specific depth (cm) using the following equation
86,52
:
𝑆𝑂𝐶 𝑠𝑡𝑜𝑐𝑘 (𝑀𝑔 𝐶 ℎ𝑎
−1
) =
𝑆𝑂𝐶 𝑥 𝐵𝐷 𝑥 𝑙𝑎𝑦𝑒𝑟 𝑡ℎ𝑖𝑐𝑘𝑛𝑒𝑠𝑠
10
(1)
Classification and comparison of management systems
The "agriculture" land-use class was subdivided into agricultural production and management
systems, described as follows. “Monocropping” involves a single cultivated agricultural crop
species. Grassland, eucalyptus, pine, and other perennial fruit crops were redistributed to other
categories. Crop rotation (planned alternation of crop species over time) and intercropping
(changes between growing seasons) form a category of agricultural systems where two or more
ARTICLE IN PRESS
ARTICLE IN PRESS
crops are grown sequentially in the same field, and. Such systems that included grassland in the
cycle were transferred to the “Grassland” category, which comprises cultivated and native
grassland. The latter accounts for 3% of the total category data set. “Perennial crops” are planted
forest species such as Eucalyptus spp. and Pinus spp., which represent 65% of the data set, as well
as other perennial fruit species. “Integrated agricultural systems” encompass crop–livestock
integration, crop–forest integration, forest–livestock integration, and crop–livestock–forest
integration. “Conventional tillage” is soil preparation using techniques that promote soil
disturbance, such as plowing, harrowing, and leveling, whereas “No-tillage” systems do not
disturb the soil with tillage: seeds are sowed directly into straw or the previous crop’s residues.
The study evaluated the effects of monocropping, crop rotation and intercropping, grasslands,
perennial crops, and integrated agricultural systems again NV baselines. Additionally,
conventional tillage and no-tillage management systems were compared to both NV and to
monocropping agricultural production systems.
Meta-analysis
From the primary database, we selected a subset based on the following eligibility criteria for the
meta-analysis: presenting paired data on SOC
stocks
with their respective standard deviations (SD)
and number of observations. For studies lacking SD values for SOC
stocks
measurements, missing
SDs were imputed using the approach based on median coefficients of variation
87,88
, following
these steps: (1) calculated coefficients of variation (CV) from available SD and SOC
stocks
values;
(2) estimated the median CV separately for each dataset (treatment and control); and (3) computed
missing SDs by multiplying the median CV by the reported SOC
stocks
for that group. To maintain
natural variability and minimize bias, imputation was stratified by biome, land-use class, and soil
layer. We tested the effect of different imputation assumptions by conducting a sensitivity
analysis
89
, which showed only marginal change in means and 95% confidence intervals with
different imputed SD values, indicating our findings were robust (Supplementary Table S28 and
Fig. S8). The final database contains data from 2004-2024 (considering the 20-year IPCC steady-
state period), presented in 1,247 pairwise comparisons (NV vs. AGR) and grouped by layer depth
(0–10 cm, 0–20 cm, and 0–30 cm) and by biome.
We selected the weighted mean difference (MD) as a dependent variable of the meta-analysis to
measure the effect size of the NV-to-AGR transition. The MD and Natural log of response ratio
(lnRR) were calculated to measure the effect of different agricultural and management systems on
SOC
stocks
using the following equations:
MD = 𝜇
𝑒−
𝜇
𝑐
(2)
lnRR = ln
𝜇
𝑒
𝜇
𝑐
=ln ln (𝜇
𝑒
) −ln ln (𝜇
𝑐
)
(3)
where μ
c
and μ
e
correspond to the average SOC
stocks
before (control) and after (treatment) the
change in land-use/management practices
46
, respectively.
To quantify the effect size of the NV-to-AGR transition, we compared estimates obtained from
two models: a random-effects model and a linear mixed-effects model
90
. Both types of models
were fitted using restricted maximum likelihood estimation. For the mixed-effects model, we
evaluated the inclusion of nine moderator variables, both categorical and continuous, categorized
by temporal dynamics, climate and soil classes, geography, and soil management systems, nested
ARTICLE IN PRESS
ARTICLE IN PRESS
by biome and soil layer. We used p-values (considered significant when <0.05, indicating a direct
effect) and R² (the proportion of explained heterogeneity) as primary criteria for including or
excluding moderators. As secondary criteria, we examined indicators related to heterogeneity
diagnostics: τ² (between-study variance), I² (proportion of variance due to heterogeneity), and H²
(heterogeneity ratio), which quantify the magnitude of remaining heterogeneity
90
. In practical
terms, a significant increase (p < 0.05) in explained heterogeneity (R²), along with reductions in
heterogeneity indicators compared to the random-effects model, indicates that the variable
contributes to explaining variability. Based on these statistical indicators and on the main objective
of our meta-analysis, which was to estimate the technical potential for carbon accumulation in
agricultural soils across different biomes from the effect of NV-to-AGR transition on SOC
stocks
,
our model ultimately included only three moderator variables: latitude (°), mean annual
temperature (°C), and cumulative annual precipitation (mm).
To enhance interpretability of coefficients, these continuous moderators were centered and scaled
prior to their inclusion in the models. Additionally, a subgroup meta-analysis was performed to
complement the global meta-analysis and investigate the effects of new moderating variables,
which included climate and soil classes (described in Supplementary Tables S4 and S12), as well
as the age of the agricultural system, considering the year of conversion and the date of soil
sampling. The age classes were 15, 30, and over 30 years. This complementary approach allowed
for a more granular investigation into specific contextual factors that might not have been fully
captured by the global variables from the primary model, providing a nuanced understanding of
SOC
stocks
dynamics across different biomes and management contexts.
For the step of the meta-analysis procedure where we assessed the effect of different agricultural
and management systems on SOC
stocks
, the data of the three soil layers (0–10, 0–20, and 0–30 cm)
were analyzed jointly using the random-effects model (Supplementary Data3-11). To address the
non-independence of overlapping soil depth measurements within the same study site, we
employed multilevel hierarchical models
91
, using the rma.mv function. This approach explicitly
models the nested structure of our data (soil depths nested within studies) through random effects
(random = ~ 1 | study_id/depth_raw). This methodology allows us to: (1) utilize all available 0 –
rather than discarding 60% of observations by selecting only one depth per study; (2) properly
account for the correlation between overlapping soil layers from the same location; (3) avoid
pseudoreplication and the consequent underestimation of variance; and (4) provide more
conservative and accurate statistical inferences. This approach is considered the gold standard for
meta-analyses dealing with non-independent observations and has been widely recommended in
the ecological meta-analysis literature. In the case of the comparison between no-tillage and NV,
in addition to the general analysis considering the three soil layers (Fig. 3), the effect of each layer
was also evaluated individually (Supplementary Fig. S5) to detect differences associated with
carbon stratification. The results indicated that the 0–10 cm layer presented greater SOC
stocks
depletion (14.6%) than the 0–20 and 0–30 cm layers, which presented an average loss of 11.6%.
All effect size calculation procedures were performed in the R software, using the MD (raw mean
difference, e.g.
92
) and ROM (log-transformed ratio of means,
87
) functions of the R package
“Metafor”
90
, considering that the effect sizes varied randomly between the comparisons. The
effects measured to assess changes in SOC
stocks
of agricultural and management systems (ln RR)
were transformed and expressed as a percentage change using the following equation
93
:
∆ SOC stock (%) = exp [ ln (RR) − 1] x 100
(4)
ARTICLE IN PRESS
ARTICLE IN PRESS
The overall effect sizes and 95% confidence intervals (CI) were also calculated using the
“Metafor” package. Statistically significant changes in SOC
stocks
were considered valid when the
95% CI value did not overlap zero. The CIs of SOC
stocks
effect sizes for NV-to-AGR transition
were shown in forest plots (Fig. 2), where negative values indicated C losses. For agricultural and
management systems, although results were not presented in forest plots (Fig. 3; Supplementary
Table S27), we also interpreted negative percentages as C losses and positive ones as C gains.
Sensitivity analyses and publication biases
We assessed the potential for publication bias (Supplementary Fig. S9 and S10) using the funnel
plot and Egger’s test
94
. The test assesses the existence of publication bias through regression
analysis using the effect size and its precision (standard error). A significant intercept (indexed by
b), i.e., with p<0.05, suggests publication bias
95
. To assess the sensitivity of the results to
publication bias, Rosenthal's fail-safe number
96
was applied, which estimates the number of
hypothetical studies with a null effect required to nullify the significance of the combined effect
(Supplementary Table S17-20). The trim-and-fill procedure was also used to adjust the mean effect
value and thus take possible missing studies into account. The findings from the combination of
the three methods confirm that the results of the meta-analyses by biome are, for the most part,
statistically robust and little affected by publication bias. The extremely high Rosenthal's fail-safe
N values and the absence of trim-and-fill adjustments reinforce the reliability of the estimates. The
Cerrado showed the greatest sensitivity to potential bias in the 0–10 cm layer, but, even in this
case, the overall effect remained significant and stable. It is worth noting that methods such as
Egger's test and the funnel plot have their own limitations, especially in contexts with high
heterogeneity of the observed effects
97
, which applies to our study.
Calculation of potential SOC
stocks
sequestration:
The technical potential of SOC
stocks
sequestration overall and for each biome was calculated by the
following equation:
SOC stock seq. = Gap
biomes
(Mg C ha
-1
) x
AGR
area
(Mha) (5)
where SOC
stocks
seq. represents the technical potential for C sequestration (Pg C). Gap
biomes
represents the gap between AGR (treatment) - NV (control) in Mg C ha-1 and AGR
area
, the
available agricultural area in the biomes in Mha.
Statistical analysis
The comparison between the SOC
stocks
(dependent variable) under NV and AGR across climate
and soil classes, as well as across biomes, was made employing the ANOVA test, the Tukey's post
hoc test for normal distribution, and the nonparametric Kruskal-Wallis (univariate) when the
normality condition was not met, all of them for a statistical significance level of 5%. The analyses
were performed using the “rstatix” package in the R software (R Core Team, 2021
98
).
Data availability
All data supporting the findings of this study are available within the paper and its Supplementary
Information files.
Code availability
ARTICLE IN PRESS
ARTICLE IN PRESS
All code used for data processing, statistical analyses and figure generation has been deposited in
a
publicly
accessible
GitHub–Zenodo
repository
under
the
DOI:
https://doi.org/10.5281/zenodo.17842918.
References
1. Beillouin, D.
et al.
A global meta-analysis of soil organic carbon in the Anthropocene.
Nat.
Commun.
14
, 3700 (2023).
2. Wang, Y.
et al.
Land availability and policy commitments limit global climate mitigation
from forestation.
Science
389
, 931–934 (2025).
3. Fargione, J. E.
et al.
Natural climate solutions for the United States.
Sci. Adv.
4
, eaat1869
(2018).
4. Sanderman, J., Hengl, T. & Fiske, G. J. Soil carbon debt of 12,000 years of human land use.
Proc. Natl. Acad. Sci.
114
, 9575–9580 (2017).
5. Zomer, R. J., Bossio, D. A., Sommer, R. & Verchot, L. V. Global sequestration potential of
increased organic carbon in cropland soils.
Sci. Rep.
7
, 15554 (2017).
6. Matos, P. S.
et al.
Impact of land use intensification on key drivers of soil organic carbon
pools in Brazil’s Central-West.
CATENA
249
, 108636 (2025).
7. Feng, Y.
et al.
Doubling of annual forest carbon loss over the tropics during the early twenty-
first century.
Nat. Sustain.
5
, 444–451 (2022).
8. Patil, M.
et al.
Differential impacts of regenerative agriculture practices on soil organic
carbon: a meta-analysis of studies from India.
Sci. Rep.
15
, 33470 (2025).
9. Government of Brazil.
Brazil’s NDC: national determination to contribute and transform
.
Ministry of the Environment and Climate Change, Brasília (2024).
ARTICLE IN PRESS
ARTICLE IN PRESS
10.
SEEG – Sistema de Estimativas de Emissões e Remoções de Gases de Efeito Estufa.
Análise das emissões de gases de efeito estufa e suas implicações para as metas climáticas do
Brasil: 1970–2023. (Observatório do Clima, 2024); available at: https://seeg.eco.br/relatorios
11.
World Resources Institute (WRI). Climate Watch Data: Greenhouse gas emissions by
sector and country. Available at: https://www.climatewatchdata.org/ (accessed Oct 2025).
12.
Bossio, D. A.
et al.
The role of soil carbon in natural climate solutions.
Nat. Sustain.
3
,
391–398 (2020).
13.
Paustian, K., Larson, E., Kent, J., Marx, E. & Swan, A. Soil C sequestration as a
biological negative emission strategy.
Front. Clim.
1
, 8 (2019).
14.
Lal, R. Soil carbon sequestration impacts on global climate change and food security.
Science
304
, 1623–1627 (2004).
15.
Wiesmeier, M.
et al.
Soil organic carbon storage as a key function of soils - A review of
drivers and indicators at various scales.
Geoderma
333
, 149–162 (2019).
16.
Luo, Z., Viscarra-Rossel, R. A. & Qian, T. Similar importance of edaphic and climatic
factors for controlling soil organic carbon stocks of the world.
Biogeosciences
18
, 2063–2073
(2021).
17.
Johnston, A. E., Poulton, P. R. & Coleman, K. Soil Organic Matter. in
Advances in
Agronomy
vol. 101 1–57 (Elsevier, 2009).
18.
Jobbagyi, E. G. & Jackson, R. B. The vertical distribution of soil organic carbon and its
relation to climate and vegetation Ecol. Appl.
10
, 423–436 (2000).
19.
Smith, J.
et al.
Projected changes in mineral soil carbon of European croplands and
grasslands, 1990–2080.
Glob. Change Biol.
11
, 2141–2152 (2005).
ARTICLE IN PRESS
ARTICLE IN PRESS
20.
Alvares, C. A., Stape, J. L. & Sentelhas, P. C. Köppen’s climate classification map for
Brazil. Meteorol. Z.
22
, 711–728 (2013)
21.
Santos, H.G et al. Sistema Brasileiro de Classificação de Solos. 5th ed. Brasília:
Embrapa; (2018).
22.
Carvalho, J. L. N.
et al.
Impact of pasture, agriculture and crop-livestock systems on soil
C stocks in Brazil.
Soil Tillage Res.
110
, 175–186 (2010).
23.
Zinn, Y. L., Lal, R. & Resck, D. V. S. Changes in soil organic carbon stocks under
agriculture in Brazil.
Soil Tillage Res.
84
, 28–40 (2005).
24.
Sousa, J. E. S. D.
et al.
Carbon stocks in Planosols along a rainfall gradient in Northeast
Brazil.
CATENA
245
, 108295 (2024).
25.
Neves, L. V. D. M. W.
et al.
Microbial abundance and C and N stocks in tropical
degraded Planosols from semiarid northeastern Brazil.
CATENA
196
, 104931 (2021).
26.
Villarino, S. H.
et al.
Deforestation impacts on soil organic carbon stocks in the Semiarid
Chaco Region, Argentina.
Sci. Total Environ.
575
, 1056–1065 (2017).
27.
Gomes, L. C.
et al.
Modelling and mapping soil organic carbon stocks in Brazil.
Geoderma
340
, 337–350 (2019).
28.
Vieira, S. A.
et al.
Stocks of carbon and nitrogen and partitioning between above‐ and
belowground pools in the Brazilian coastal Atlantic Forest elevation range.
Ecol. Evol.
1
,
421–434 (2011).
29.
Babujia, L. C., Hungria, M., Franchini, J. C. & Brookes, P. C. Microbial biomass and
activity at various soil depths in a Brazilian oxisol after two decades of no-tillage and
conventional tillage.
Soil Biol. Biochem.
42
, 2174–2181 (2010).
ARTICLE IN PRESS
ARTICLE IN PRESS
30.
Boddey, R. M.
et al.
Carbon accumulation at depth in Ferralsols under zero‐till
subtropical agriculture.
Glob. Change Biol.
16
, 784–795 (2010).
31.
Da Luz, F. B.
et al.
Monitoring soil quality changes in diversified agricultural cropping
systems by the Soil Management Assessment Framework (SMAF) in southern Brazil.
Agric.
Ecosyst. Environ.
281
, 100–110 (2019).
32.
Damian, J. M.
et al.
Predicting soil C changes after pasture intensification and
diversification in Brazil.
CATENA
202
, 105238 (2021).
33.
De Oliveira Ferreira, A.
et al.
Can no-till grain production restore soil organic carbon to
levels natural grass in a subtropical Oxisol?
Agric. Ecosyst. Environ.
229
, 13–20 (2016).
34.
Frazão, L. A., Paustian, K., Cerri, C. E. P. & Cerri, C. C. Soil carbon stocks under oil
palm plantations in Bahia State, Brazil.
Biomass Bioenergy
62
, 1–7 (2014).
35.
Dos Santos, C. A.
et al.
Changes in soil carbon stocks after land-use change from native
vegetation to pastures in the Atlantic forest region of Brazil.
Geoderma
337
, 394–401 (2019).
36.
Wuaden, C. R., Nicoloso, R. S., Barros, E. C. & Grave, R. A. Early adoption of no-till
mitigates soil organic carbon and nitrogen losses due to land use change.
Soil Tillage Res.
204
, 104728 (2020).
37.
MapBiomas. Coleção 7 —
Pastagem: Série histórica de cobertura e uso da terra no
Brasil
. MapBiomas (2022).
38.
Schaefer, C. E. G. R.
et al.
Soil and vegetation carbon stocks in Brazilian Western
Amazonia: relationships and ecological implications for natural landscapes.
Environ. Monit.
Assess.
140
, 279–289 (2008).
39.
Soares, M. B.
et al.
Integrated production systems: An alternative to soil chemical quality
restoration in the Cerrado-Amazon ecotone.
CATENA
185
, 104279 (2020).
ARTICLE IN PRESS
ARTICLE IN PRESS
40.
Cerri, C. E. P.
et al.
Modeling Soil Carbon from Forest and Pasture Ecosystems of
Amazon, Brazil.
Soil Sci. Soc. Am. J.
67
, 1879–1887 (2003).
41.
Desjardins, T., Barros, E., Sarrazin, M., Girardin, C. & Mariotti, A. Effects of forest
conversion to pasture on soil carbon content and dynamics in Brazilian Amazonia.
Agric.
Ecosyst. Environ.
103
, 365–373 (2004).
42.
Fujisaki, K.
et al.
From forest to cropland and pasture systems: a critical review of soil
organic carbon stocks changes in Amazonia.
Glob. Change Biol.
21
, 2773–2786 (2015).
43.
Tenelli, S.
et al.
Well-managed grass is a key strategy for carbon storage and stabilization
in anthropized Amazon soils.
J. Environ. Manage.
373
, 123742 (2025).
44.
Gregory, A. S.
et al.
Long‐term management changes topsoil and subsoil organic carbon
and nitrogen dynamics in a temperate agricultural system.
Eur. J. Soil Sci.
67
, 421–430
(2016).
45.
Haddaway, N. R.
et al.
How does tillage intensity affect soil organic carbon? A
systematic review.
Environ. Evid.
6
, 30 (2017).
46.
Xiao, C.
et al.
Impacts of Land-Use Change from Primary Forest to Farmland on the
Storage of Soil Organic Carbon.
Appl. Sci.
14
, 4736 (2024).
47.
Yu, H., Zha, T., Zhang, X. & Ma, L. Vertical distribution and influencing factors of soil
organic carbon in the Loess Plateau, China.
Sci. Total Environ.
693
, 133632 (2019).
48.
Pretty, J. & Bharucha, Z. P. Sustainable intensification in agricultural systems.
Ann. Bot.
114
, 1571–1596 (2014).
49.
Don, A., Schumacher, J. & Freibauer, A. Impact of tropical land-use change on soil
organic carbon stocks - a meta-analysis.
Glob. Change Biol.
17
, 1658–1670 (2011).
ARTICLE IN PRESS
ARTICLE IN PRESS
50.
Huang, X.
et al.
Land Use Change Alters Soil Organic Carbon: Constrained Global
Patterns and Predictors.
Earths Future
12
, e2023EF004254 (2024).
51.
Deng, L., Zhu, G., Tang, Z. & Shangguan, Z. Global patterns of the effects of land-use
changes on soil carbon stocks.
Glob. Ecol. Conserv.
5
, 127–138 (2016).
52.
Guo, L. B. & Gifford, R. M. Soil carbon stocks and land use change: a meta analysis.
Glob. Change Biol.
8
, 345–360 (2002).
53.
Harris, Z. M., Spake, R. & Taylor, G. Land use change to bioenergy: A meta-analysis of
soil carbon and GHG emissions.
Biomass Bioenergy
82
, 27–39 (2015).
54.
Zhou, Z., Wang, C. & Luo, Y. Effects of forest degradation on microbial communities
and soil carbon cycling: A global meta‐analysis.
Glob. Ecol. Biogeogr.
27
, 110–124 (2018).
55.
Urrutia Larrachea, I., Poggio, S. L., Cosentino, D. & Semmartin, M. A comparative
analysis of soil organic carbon stock and soil aggregation in two crop sequences in the Rolling
Pampa (Argentina).
Agric. Ecosyst. Environ.
375
, 109183 (2024).
56.
Chen, J., Lærke, P. E. & Jørgensen, U. Optimized crop rotations increase biomass
production without significantly changing soil carbon and nitrogen stock.
Ecol. Indic.
117
,
106669 (2020).
57.
Giustiniani, E., Behrends Kraemer, F. & Garibaldi, L. A. Crop sequence intensification:
Meta‐analysis of soil organic carbon and aggregate stability in Argentina.
Eur. J. Soil Sci.
75
,
e13485 (2024).
58.
Liu, X.
et al.
Response of soil organic carbon content to crop rotation and its controls: A
global synthesis.
Agric. Ecosyst. Environ.
335
, 108017 (2022).
59.
Xin, J., Yan, L. & Cai, H. Response of soil organic carbon to straw return in farmland
soil in China: A meta-analysis.
J. Environ. Manage.
359
, 121051 (2024).
ARTICLE IN PRESS
ARTICLE IN PRESS
60.
Li, S.
et al.
How does intercropping contribute to soil organic carbon accumulation? A
global synthesis.
Agric. Ecosyst. Environ.
374
, 109173 (2024).
61.
Zheng, F.
et al.
Positive effects of crop rotation on soil aggregation and associated
organic carbon are mainly controlled by climate and initial soil carbon content: A meta-
analysis.
Agric. Ecosyst. Environ.
355
, 108600 (2023).
62.
Dmuchowski, W., Baczewska-Dąbrowska, A. H. & Gworek, B. The role of temperate
agroforestry in mitigating climate change: A review.
For. Policy Econ.
159
, 103136 (2024).
63.
Chatterjee, N., Nair, P. K. Ramachandran., Chakraborty, S. & Nair, V. D. Changes in soil
carbon stocks across the Forest-Agroforest-Agriculture/Pasture continuum in various
agroecological regions: A meta-analysis.
Agric. Ecosyst. Environ.
266
, 55–67 (2018).
64.
De Stefano, A. & Jacobson, M. G. Soil carbon sequestration in agroforestry systems: a
meta-analysis.
Agrofor. Syst. 92
, 285-299 (2017).
65.
Ma, Z., Chen, H. Y. H., Bork, E. W., Carlyle, C. N. & Chang, S. X. Carbon accumulation
in agroforestry systems is affected by tree species diversity, age and regional climate: A
global meta‐analysis.
Glob. Ecol. Biogeogr.
29
, 1817–1828 (2020).
66.
Mayer, S.
et al.
Soil organic carbon sequestration in temperate agroforestry systems – A
meta-analysis.
Agric. Ecosyst. Environ.
323
, 107689 (2022).
67.
Kuhn, N. J.
et al.
Conservation tillage and sustainable intensification of agriculture:
regional vs. global benefit analysis.
Agric. Ecosyst. Environ.
216
, 155–165 (2016).
68.
Haughey, E., Neogi, S., Portugal-Pereira, J., Van Diemen, R. & Slade, R. B. Sustainable
intensification and carbon sequestration research in agricultural systems: A systematic review.
Environ. Sci. Policy
143
, 14–23 (2023).
ARTICLE IN PRESS
ARTICLE IN PRESS
69.
Kopittke, P. M., Dalal, R. C., Finn, D. & Menzies, N. W. Global changes in soil stocks of
carbon, nitrogen, phosphorus, and sulphur as influenced by long‐term agricultural production.
Glob. Change Biol.
23
, 2509–2519 (2017).
70.
Silveira, M. L.
et al.
Opportunities to increase soil carbon sequestration in grazing lands
in the southeastern United States.
Grassl. Res.
3
, 69–78 (2024).
71.
Rodríguez, A., Canals, R. M. & Sebastià, M.-T. Positive Effects of Legumes on Soil
Organic Carbon Stocks Disappear at High Legume Proportions Across Natural Grasslands in
the Pyrenees.
Ecosystems
25
, 960–975 (2022).
72.
Conant, R. T., Cerri, C. E. P., Osborne, B. B. & Paustian, K. Grassland management
impacts on soil carbon stocks: a new synthesis.
Ecol. Appl.
27
, 662–668 (2017).
73.
Cong, W.
et al.
Intercropping enhances soil carbon and nitrogen.
Glob. Change Biol.
21
,
1715–1726 (2015).
74.
Tavanti, R. F. R.
et al.
What is the impact of pasture reform on organic carbon
compartments and CO2 emissions in the Brazilian Cerrado?
CATENA
194
, 104702 (2020).
75.
Powers, J. S., Corre, M. D., Twine, T. E. & Veldkamp, E. Geographic bias of field
observations of soil carbon stocks with tropical land-use changes precludes spatial
extrapolation.
Proc. Natl. Acad. Sci.
108
, 6318–6322 (2011).
76.
De Oliveira, D. C., Maia, S. M. F., Freitas, R. D. C. A. & Cerri, C. E. P. Changes in soil
carbon and soil carbon sequestration potential under different types of pasture management in
Brazil.
Reg. Environ. Change
22
, 87 (2022).
77.
Ministério da Agricultura, Pecuária e Abastecimento
. Plan for Adaptation and Low
Carbon Emission in Agriculture: Strategic Vision for a New Cycle.
Ministério da Agricultura,
Pecuária e Abastecimento, Brasília, DF, 2021).
ARTICLE IN PRESS
ARTICLE IN PRESS
78.
Brazil. Decree No. 11.815, of 5 December 2023.
Establishes the National Program for
the Conversion of Degraded Pastures into Sustainable Agricultural and Forestry Production
Systems (PNCPD)
. Presidency of the Republic, Brasília (2023).
79.
Mello, F. F. C.
et al.
Payback time for soil carbon and sugar-cane ethanol.
Nat. Clim.
Change
4
, 605–609 (2014).
80.
De Souza Medeiros, A., Malta Ferreira Maia, S., Dos Santos, T. C. & De Araújo Gomes,
T. C. Soil carbon losses in conventional farming systems due to land-use change in the
Brazilian semi-arid region.
Agric. Ecosyst. Environ.
287
, 106690 (2020).
81.
Fuentes-Llanillo, R.
et al.
Expansion of no-tillage practice in conservation agriculture in
Brazil.
Soil Tillage Res.
208
, 104877 (2021).
82.
Maia, S. M. F.
et al.
Potential of no-till agriculture as a nature-based solution for climate-
change mitigation in Brazil.
Soil Tillage Res.
220
, 105368 (2022).
83.
Hatano, R., Mukumbuta, I. & Shimizu, M. Soil Health Intensification through
Strengthening Soil Structure Improves Soil Carbon Sequestration.
Agriculture
14
, 1290
(2024).
84.
Souza, V. S.
et al.
Cover crops enhance soil health, crop yield and resilience of tropical
agroecosystem.
Field Crops Res.
322
, 109755 (2025).
85.
Cherubin, M. R.
et al.
Long-term effects of crop diversification on soil health, crop yield
and resilience of tropical agroecosystems.
J. Environ. Manage.
392
, 126845 (2025).
86.
Fang, X., Xue, Z., Li, B. & An, S. Soil organic carbon distribution in relation to land use
and its storage in a small watershed of the Loess Plateau, China.
CATENA
88
, 6–13 (2012).
87.
Lajeunesse, M. J. On the meta-analysis of response ratios for studies with correlated and
multi-group designs.
Ecology
92
, 2049–2055 (2011).
ARTICLE IN PRESS
ARTICLE IN PRESS
88.
Vetter, D.
Handbook of Meta-Analysis in Ecology and Evolution
. Edited by Julia
Koricheva, Jessica Gurevitch, and Kerrie Mengersen. Princeton (New Jersey): Princeton
University Press. $99.50 (hardcover); $65.00 (paper). xv + 498 p.; ill.; subject index. ISBN:
978-0-691-13728-5 (hc); 978-0-691-13729-2 (pb). 2013.
Q. Rev. Biol.
89
, 53–54 (2014).
89.
Melikov, C. H.
et al.
Quantifying the Effect Size of Management Actions on
Aboveground Carbon Stocks in Forest Plantations.
Curr. For. Rep.
9
, 131–148 (2023).
90.
Viechtbauer, W. Conducting Meta-Analyses in
R
with the metafor Package.
J. Stat.
Softw.36
, 1–48
(2010).
91.
Nakagawa, S., Senior, A. M., Viechtbauer, W. & Noble, D. W. A. An assessment of
statistical methods for nonindependent data in ecological meta‐analyses: Comment.
Ecology
103
, e03490 (2022).
92.
Borenstein, M., Hedges, L. V., Higgins, J. P. T. & Rothstein, H. R.
Introduction to Meta‐
Analysis
. (Wiley, 2009). doi:10.1002/9780470743386.
93.
Siddique, I. A., Grados, D., Chen, J., Lærke, P. E. & Jørgensen, U. Soil organic carbon
stock change following perennialization: a meta-analysis.
Agron. Sustain. Dev.
43
, 58 (2023).
94.
Sterne, J. A. C. & Egger, M. Funnel plots for detecting bias in meta-analysis: guidelines
on choice of axis. J. Clin. Epidemiol.
54
, 1046–1047 (2001).95. Egger, M., Smith, G. D.,
Schneider, M. & Minder, C. Bias in meta-analysis detected by a simple, graphical test.
BMJ
315
, 629–634 (1997).
96.
Fragkos, K. C., Tsagris, M. & Frangos, C. C. Publication Bias in Meta-Analysis:
Confidence Intervals for Rosenthal’s Fail-Safe Number.
Int. Sch. Res. Not.
2014
, 1–17 (2014).
97.
Terrin, N., Schmid, C. H., Lau, J. & Olkin, I. Adjusting for publication bias in the
presence of heterogeneity.
Stat. Med.
22
, 2113–2126 (2003).
ARTICLE IN PRESS
ARTICLE IN PRESS
98.
R Core Team. R: A language and environment for statistical computing. (R Foundation
for Statistical Computing, Vienna, Austria, 2024). Available at: https://www.R-project.org/
Acknowledgements
J.V. acknowledges support from the São Paulo Research Foundation (FAPESP, grant
#2023/09533-3). J.D. acknowledges support from the São Paulo Research Foundation (FAPESP,
grant #2022/08629-4). M.R.C. acknowledges support from the National Council for Scientific and
Technological
Development
(CNPq,
grant
#302249/2025-7).
This research was supported by: (i) the Center for Carbon Research in Tropical Agriculture
(CCARBON/USP), sponsored by FAPESP (grant #2021/10573-4); (ii) the Research Centre for
Greenhouse Gas Innovation (RCGI/USP), sponsored by FAPESP (grant #2020/15230-5) and Shell
Brasil;
and
(iii)
Bayer’s
PROCarbono
project.
The authors thank M.Sc. Julie Camolesi da Silva and Professor Fabricio Batistin Zanatta for their
assistance with statistical analyses, and Marina Pinho Oncken for language review services.
Author contributions
J.V., M.C., J.D., and C.C. designed the study. J.V. and J.D collected data. J.V. performed the meta-
analysis. J.V. wrote the article, with significant contributions provided by M.C., J.D., D.G., L.B.,
and C.C. All the authors contributed to the discussions and paper revision.
Competing interests
The authors declare no competing interests.
Figure 1.
Comparison of SOC
stocks
under agriculture and native vegetation across Brazil and its biomes.
In the
violin plots, dots (black) indicate average (mean) values for SOC
stocks
under native vegetation - NV (green dots) and
agriculture - AGR (orange dots), and the kernel density plot represents the distribution of SOC
stocks
among land uses
overall in Brazil and across its biomes for soil layers 0–10 cm, 0–20 cm, 0–30 cm, and 0–100 cm. The values for each
depth layer are independent and should not be interpreted cumulatively. *Data Absence.
Figure 2.
Soil carbon stock changes and sequestration potential across Brazilian biomes.
a) Location of studies
of SOC
stocks
under agriculture (AGR) and native vegetation (NV) and gaps in soil C stocks (Mg ha-1) of the biomes at
the depths 0–10, 0–20 and 0–30 cm, obtained from the effect size (mean difference) of land use change (NV to AGR);
b) Overall gaps in SOC
stocks
(Mg ha
-1
); c) Distribution of soil C sequestration potential (Pg C) across the Brazilian
biomes. The bars represent the confidence interval (CI: 95%) of the gap values of soil C stocks and the values next to
each mean point () represent the size of the sample evaluated (as presented in Table S1 in supporting information S1).
The values for each depth layer are independent and should not be interpreted cumulatively.
In Figure 2a, the free
biome boundary data were obtained from IBGE (https://www.ibge.gov.br/geociencias/todos-os-produtos-
geociencias.html), the data on native vegetation and agricultural areas were obtained from MapBiomas – Coleção 7
ARTICLE IN PRESS
ARTICLE IN PRESS
of the Annual Land Use and Land Cover Mapping Series (https://brasil.mapbiomas.org/downloads/), and the
hydrographic network data were obtained from the ANA metadata catalogue (https://metadados.snirh.gov.br/). The
data used to map the distribution of the study sites are available in Supplementary Data 1.
Figure 3.
Percent change in SOC
stocks
resulting from land-use and management transitions in Brazilian biomes.
The bars represent the mean effect sizes expressed as percent change (±95% CI of the response ratio-lnRR),
estimated using a random-effects model. Values in parentheses indicate the number of paired observations
used to calculate changes in SOC
stocks
among land-use and management systems, whereas values in brackets
represent the confidence intervals. The notation ns indicates non-significant statistical differences at the
95% confidence interval. In the overall panel, negative effects are shown in red and positive effects in green.
Editor’s Summary
This study quantifies Brazil’s soil carbon debt (1.40 Pg C) and demonstrates that improved
agricultural practices enhance carbon recovery. The findings reveal Brazil’s significant capacity
to mitigate emissions and influence global carbon markets.
Peer review information
:
Nature Communications
thanks Ciniro Costa Junior, Filipe Behrends
Kraemer and Li Xu for their contribution to the peer review of this work. A peer review file is
available.